PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.010G112200.1

Common Name

B456_010G112200

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 479aa MW: 51453.2 Da PI: 9.2938

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.010G112200.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.1	5e-11	269	314	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Gorai.010G112200.1 269 HSIAERLRRVRIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 314 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.34E-12	262	318	No hit	No description
SuperFamily	SSF47459	5.63E-16	262	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.723	264	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	266	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-8	269	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-12	270	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MHTELLSIFS KSKPQSKKKK KEKLVPSSSI SFIIKAKKKT LIMQPCSREM QAMNSLLNPT 60 QQIPLQDLQI NGNRHHHQQI HVPSSSQFQY PTPTSTTHHD DSFLEQILSS TTSFPWSDET 120 GPPNPEDNNN AGFNYDEMVL ASKLRQHQIN GGAAGNPFAA MKMMLMMQQQ QQQQQMMLAG 180 RPTVASAAAG GGITTNHQGG EGSMQALYNV FGDGSLHGTM QAKSFVGANS ATEMTQSQGS 240 GPTAGEAVTA PEKPKQRVRA RRGQATDPHS IAERLRRVRI AERMKALQEL VPNANKTDKA 300 SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVSELYD FLFLLKGGGD CIQTSANGGS 360 HPRNSNGDQT PSANDRLTMT EHQVAKLMEE DMGSAMQYLQ EKGLCLMPIS LATAISSATS 420 RSRNPMINHE NPTNGSHLLI QSSGGDGPSS PSMSVLTVQS ATMGNGGLEG GAASVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MHTELLSIFS KSKPQSKKKK KEKLVPSSSI SFIIKAKKKT LIMQPCSREM QAMNSLLNPT  60
QQIPLQDLQI NGNRHHHQQI HVPSSSQFQY PTPTSTTHHD DSFLEQILSS TTSFPWSDET  120
GPPNPEDNNN AGFNYDEMVL ASKLRQHQIN GGAAGNPFAA MKMMLMMQQQ QQQQQMMLAG  180
RPTVASAAAG GGITTNHQGG EGSMQALYNV FGDGSLHGTM QAKSFVGANS ATEMTQSQGS  240
GPTAGEAVTA PEKPKQRVRA RRGQATDPHS IAERLRRVRI AERMKALQEL VPNANKTDKA  300
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVSELYD FLFLLKGGGD CIQTSANGGS  360
HPRNSNGDQT PSANDRLTMT EHQVAKLMEE DMGSAMQYLQ EKGLCLMPIS LATAISSATS  420
RSRNPMINHE NPTNGSHLLI QSSGGDGPSS PSMSVLTVQS ATMGNGGLEG GAASVSKP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF836432	0.0	KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012451348.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH69
Swissprot	Q9ZUG9	1e-80	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0D2SQY0	0.0	A0A0D2SQY0_G
STRING	POPTR_0018s11800.1	1e-151	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	8e-69	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Gorai.010G112200.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]