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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.010G112200.1 | ||||||||
Common Name | B456_010G112200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 479aa MW: 51453.2 Da PI: 9.2938 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.1 | 5e-11 | 269 | 314 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Gorai.010G112200.1 269 HSIAERLRRVRIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 314 99***********************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.34E-12 | 262 | 318 | No hit | No description |
SuperFamily | SSF47459 | 5.63E-16 | 262 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.723 | 264 | 313 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-15 | 266 | 323 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-8 | 269 | 314 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.7E-12 | 270 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MHTELLSIFS KSKPQSKKKK KEKLVPSSSI SFIIKAKKKT LIMQPCSREM QAMNSLLNPT 60 QQIPLQDLQI NGNRHHHQQI HVPSSSQFQY PTPTSTTHHD DSFLEQILSS TTSFPWSDET 120 GPPNPEDNNN AGFNYDEMVL ASKLRQHQIN GGAAGNPFAA MKMMLMMQQQ QQQQQMMLAG 180 RPTVASAAAG GGITTNHQGG EGSMQALYNV FGDGSLHGTM QAKSFVGANS ATEMTQSQGS 240 GPTAGEAVTA PEKPKQRVRA RRGQATDPHS IAERLRRVRI AERMKALQEL VPNANKTDKA 300 SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVSELYD FLFLLKGGGD CIQTSANGGS 360 HPRNSNGDQT PSANDRLTMT EHQVAKLMEE DMGSAMQYLQ EKGLCLMPIS LATAISSATS 420 RSRNPMINHE NPTNGSHLLI QSSGGDGPSS PSMSVLTVQS ATMGNGGLEG GAASVSKP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF836432 | 0.0 | KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012451348.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH69 | ||||
Swissprot | Q9ZUG9 | 1e-80 | BH066_ARATH; Transcription factor bHLH66 | ||||
TrEMBL | A0A0D2SQY0 | 0.0 | A0A0D2SQY0_G | ||||
STRING | POPTR_0018s11800.1 | 1e-151 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3042 | 27 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 8e-69 | LJRHL1-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.010G112200.1 |
Publications ? help Back to Top | |||
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