PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G112200.1
Common NameB456_010G112200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 479aa    MW: 51453.2 Da    PI: 9.2938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G112200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.15e-11269314555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h+++Er RR ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Gorai.010G112200.1 269 HSIAERLRRVRIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 314
                         99***********************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.34E-12262318No hitNo description
SuperFamilySSF474595.63E-16262324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.723264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15266323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-8269314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-12270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MHTELLSIFS KSKPQSKKKK KEKLVPSSSI SFIIKAKKKT LIMQPCSREM QAMNSLLNPT  60
QQIPLQDLQI NGNRHHHQQI HVPSSSQFQY PTPTSTTHHD DSFLEQILSS TTSFPWSDET  120
GPPNPEDNNN AGFNYDEMVL ASKLRQHQIN GGAAGNPFAA MKMMLMMQQQ QQQQQMMLAG  180
RPTVASAAAG GGITTNHQGG EGSMQALYNV FGDGSLHGTM QAKSFVGANS ATEMTQSQGS  240
GPTAGEAVTA PEKPKQRVRA RRGQATDPHS IAERLRRVRI AERMKALQEL VPNANKTDKA  300
SMLDEIIDYV KFLQLQVKVL SMSRLGGAAA VAPLVSELYD FLFLLKGGGD CIQTSANGGS  360
HPRNSNGDQT PSANDRLTMT EHQVAKLMEE DMGSAMQYLQ EKGLCLMPIS LATAISSATS  420
RSRNPMINHE NPTNGSHLLI QSSGGDGPSS PSMSVLTVQS ATMGNGGLEG GAASVSKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8364320.0KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451348.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH69
SwissprotQ9ZUG91e-80BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0D2SQY00.0A0A0D2SQY0_G
STRINGPOPTR_0018s11800.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.18e-69LJRHL1-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]